Workflow: process VCF workflow
Fetched 2024-12-29 17:14:35 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| vcf | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bgzip |
../tools/bgzip.cwl
(CommandLineTool)
|
bgzip VCF | |
| index |
../tools/index_vcf.cwl
(CommandLineTool)
|
vcf index | |
| add_gt |
../tools/add_strelka_gt.cwl
(CommandLineTool)
|
add GT tags |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| processed_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/31602b94b34ff55876147c7299e1bec47e8d1a31/definitions/subworkflows/strelka_process_vcf.cwl
