- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
cram | File | ||
reference | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
index_bam |
../tools/index_bam.cwl
(CommandLineTool)
|
samtools index | |
cram_to_bam |
../tools/cram_to_bam.cwl
(CommandLineTool)
|
samtools view cram to bam |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
bam | File |
Permalink:
https://w3id.org/cwl/view/git/25eab0390f6866ce491b44c89d9e0435d228ab6f/definitions/subworkflows/cram_to_bam_and_index.cwl