Workflow: Per-region pindel

Fetched 2023-01-13 12:30:14 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
reference String
tumor_bam File
normal_bam File
insert_size Integer
region_file File

Steps

ID Runs Label Doc
cat
../tools/cat_out.cwl (CommandLineTool)
pindel
../tools/pindel.cwl (CommandLineTool)
pindel v0.2.5b8

Outputs

ID Type Label Doc
per_region_pindel_out File
Permalink: https://w3id.org/cwl/view/git/24e5290aec441665c6976ee3ee8ae3574c49c6b5/definitions/subworkflows/pindel_cat.cwl