CWL Workflow: ReceiveAndAssert

Workflow: ReceiveAndAssert

Fetched 2023-06-22 18:36:03 GMT

Verified with cwltool version 3.1.20230201224320

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

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Default Values
Nested Workflows
Tools
Inputs/Outputs

This workflow is Open Source and may be reused according to the terms of: BSD 3-clause "New" or "Revised" License

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Title	Doc
input	File		Input data or model parameter. DEVELOPERNOTE - any input is considered to be a file, even if it is a single number. DEVELOPERNOTE - does that need to be an array of files?
schema	File		Schema describing the input data. DEVELOPERNOTE - explicitely list schema here; could later be retrieved by a workflow. DEVELOPERNOTE - does that need to be an array of files?

Steps

ID	Runs	Label	Doc
assert_data	tools/assert_data.cwl (CommandLineTool)	assert_data	Assert data or model parameter(s) using a schema describing format, data types, units, and value ranges. DEVELOPERNOTE - Is this part of this tool - Input data is enriched with metadata to ensure full reproducibility.
archive_data	tools/archive_data.cwl (CommandLineTool)	archive_data	Submit data to archive for long-term storage. DEVELOPER-NOTE - ingest command to DPPS-BDMS subsystem. DEVELOPER-NOTE - assume in that metadata is included.

Outputs

ID	Type	Label	Doc
return_code	String
data_asserted	File