Workflow: workflow-phmmer-blast.cwl
Fetched 2023-01-09 18:14:23 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| db | String | ||
| outf | String | ||
| type | String | ||
| String | |||
| method | String | ||
| program | String | ||
| database | String | ||
| sequence | File | ||
| useSeqId | String | ||
| outformat | String | ||
| multifasta | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| phmmer_step |
hmmer3_phmmer.cwl
(CommandLineTool)
|
||
| dbfetch_step |
dbfetch.cwl
(CommandLineTool)
|
||
| ncbiblast_step |
ncbiblast.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| workflow_output | File[] |
Permalink:
https://w3id.org/cwl/view/git/5df6b762980b15b0f6389149311b82bdd6dff37d/workflows/workflow-phmmer-blast.cwl
