Workflow: qiime2 DADA2 detect/correct paired sequence data
Fetched 2024-11-23 20:07:09 GMT
Verified with cwltool version 3.1.20221201130942
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
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- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| n_threads | Integer | ||
| trim_left_f | Integer | ||
| trim_left_r | Integer | ||
| trunc_len_f | Integer | ||
| trunc_len_r | Integer | ||
| dada2_stats_filename | String | ||
| dada2_table_filename | String | ||
| demux_sequences_artifact | File | ||
| dada2_denoising_stats_filename | String | ||
| dada2_representative_sequences_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| dada2_visualization |
qiime2-step2-dada2-paired.cwl#metadata-tabulate.cwl
(CommandLineTool)
|
qiime2: Generate a tabular view of metadata | |
| dada2_denoise_paired |
qiime2-step2-dada2-paired.cwl#dada2-denoise-paired.cwl
(CommandLineTool)
|
qiime2: Ddenoises paired-end sequences, dereplicates them, and filters chimeras |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| dada2_table | File | ||
| dada2_denoising_stats | File | ||
| dada2_visualization_artifact | File | ||
| dada2_representative_sequences | File |
Permalink:
https://w3id.org/cwl/view/git/e2dc95d4f12210359360d814382e7201d836dfcf/packed/qiime2-step2-dada2-paired.cwl?part=qiime2-03-dada2-paired.cwl
