Workflow: trimming_and_qc_remote.cwl

Fetched 2022-01-20 03:49:25 GMT
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Inputs

ID Type Title Doc
fastq_2 File
nthreads Integer (Optional)
fastq_1 File

Steps

ID Runs Label Doc
qc_1
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/fastqc.cwl (CommandLineTool)
qc_2
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/fastqc.cwl (CommandLineTool)
trimming
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/trimmomatic_pe.cwl (CommandLineTool)

Outputs

ID Type Label Doc
trimmed_fastq2U File
qc_result_2 File
trimmed_fastq1U File
qc_result_1 File
trimmed_fastq2P File
trimmed_fastq1P File
Permalink: https://w3id.org/cwl/view/git/b354d35755c4234d2262d80b2b7a42efd5293362/tests/resources/cwltool/trimming_and_qc_remote.cwl