Workflow: trimming_and_qc.cwl
Fetched 2026-09-20 10:33:34 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq_1 | File | ||
| fastq_2 | File | ||
| nthreads | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| qc_1 |
fastqc.cwl
(CommandLineTool)
|
||
| qc_2 |
fastqc.cwl
(CommandLineTool)
|
||
| trimming |
trimmomatic_pe.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| qc_result_1 | File | ||
| qc_result_2 | File | ||
| trimmed_fastq1P | File | ||
| trimmed_fastq1U | File | ||
| trimmed_fastq2P | File | ||
| trimmed_fastq2U | File |
Permalink:
https://w3id.org/cwl/view/git/36da9db265120252f920ff7641e250d1d794715c/tests/resources/cwltool/trimming_and_qc.cwl
