Workflow: AltAnalyze Build Reference Indices
Fetched 2023-01-09 01:23:14 GMT
Verified with cwltool version 3.1.20221201130942
AltAnalyze Build Reference Indices ==================================
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| alias | String | Experiment short name/Alias | |
| genome | Genome type |
Genome type, such as mm10, hg19, hg38, etc |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| altanalyze_prepare_genome |
../tools/altanalyze-prepare-genome.cwl
(CommandLineTool)
|
Downloads data from the Ensembl Database based on the selected genome.
Output folder name will be always equal to ENSEMBL_VERSION__SPECIES. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| genome_data | Directory | AltAnalyze genome data |
Pre-downloaded Ensembl database for the specific genome |
| altanalyze_prepare_genome_stderr_log | File | stderr log generated by altanalyze prepare genome |
stderr log generated by altanalyze prepare genome |
| altanalyze_prepare_genome_stdout_log | File | stdout log generated by altanalyze prepare genome |
stdout log generated by altanalyze prepare genome |
Permalink:
https://w3id.org/cwl/view/git/e45ab1b9ac5c9b99fdf7b3b1be396dc42c2c9620/workflows/altanalyze-prepare-genome.cwl
