Workflow: chipseq-gen-bigwig.cwl
Fetched 2023-01-08 22:26:13 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| paired | Boolean |
True if paired end experiment, fragmentsize |
|
| mapped_reads | Integer |
Mapped reads number, tagsmapped |
|
| fragment_size | Integer |
Fragment size, |
|
| bam_bai_pair_file | File |
BAM file with index BAI file |
|
| chrom_length_file | File |
Chromosome length file |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bam_to_bigwig |
bam-bedgraph-bigwig.cwl
(Workflow)
|
Workflow converts input BAM file into bigWig and bedGraph files |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bigwig_file | File |
bigWig generated file |
Permalink:
https://w3id.org/cwl/view/git/ae2b231562822ed66b8e35e5452ae7f012416b2a/subworkflows/chipseq-gen-bigwig.cwl
