Workflow: group-isoforms-batch.cwl
Fetched 2023-07-20 06:52:48 GMT
Verified with cwltool version 3.1.20230201224320
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.
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This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| isoforms_file | File[] |
Isoforms CSV file(s) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| group_isoforms |
group-isoforms.cwl
(CommandLineTool)
|
Tool runs get_gene_n_tss.R script to group isoforms by gene and common TSS |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| genes_file | File[] |
Gene expression file(s) in TSV format |
|
| common_tss_file | File[] |
Common tss expression file(s) in TSV format |
Permalink:
https://w3id.org/cwl/view/git/433c10a6ee9f9b07f1af4141e3df6a584dfe86a1/tools/group-isoforms-batch.cwl
