Workflow: FragPipe: ProteinProphet
Fetched 2025-04-26 06:38:03 GMT
Verified with cwltool version 3.1.20221201130942
This workflow step takes the PeptideProphet output files from the first step containing the peptide validation and calculates the protein inference using ProteinProphet.
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source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| minprob | Float (Optional) |
PeptideProphet probability threshold (default 0.05) |
|
| workspace_in | File[] | Workspace |
MZML files are optional. |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| interact_protein_xml | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/080063b7443c98bc378935e16f747f8c542c9521/FragPipe-ProteinProphet/fragpipe-proteinprophet.cwl
