Workflow: FragPipe: TMT Integrator and QC
Fetched 2023-01-09 09:54:49 GMT
Verified with cwltool version 3.1.20221201130942
This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets).
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Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| database | File | ||
| psm_file | File[] |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| tmt_qc_report | File (Optional) | TMT QC Report | |
| all_report_files | File[] (Optional) |
Permalink:
https://w3id.org/cwl/view/git/080063b7443c98bc378935e16f747f8c542c9521/FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl
