Workflow: Create a tile library (SGLF) for a given set of FastJ files
Fetched 2023-01-05 02:37:20 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Requires:
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fjdir | Directory | Directory of FastJ files | |
| tagset | File | Compressed tagset in FASTA format | |
| nchunks | String | Number of chunks to scatter | |
| pathmax | String | Last/Maximum path in the tile library | |
| pathmin | String | Starting path in the tile library |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| getpaths |
getpaths.cwl
(ExpressionTool)
|
||
| createsglf |
createsglf.cwl
(CommandLineTool)
|
Create SGLF (library) files |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sglfs | 3978b53acb563fd83e72e02ae4bb6524[] | Output tile library |
Permalink:
https://w3id.org/cwl/view/git/c1ccad9f81cd3fc44a9f6e8d3b27acb154ba03cc/cwl-version/tilelib/createsglf-wf.cwl
