Workflow: Create NumPy arrays by tile path from cgfs, merge all NumPy arrays into single array
Fetched 2023-01-05 02:36:19 GMT
Verified with cwltool version 3.1.20221201130942
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Requires:
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| cgfdir | Directory | Directory of compact genome format files |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| consolnpy |
consolnpy.cwl
(CommandLineTool)
|
Consolidates multiple NumPy arrays into one large array | |
| createnpy |
createnpy.cwl
(CommandLineTool)
|
Create NumPy vectors from cgfs by tile path |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| names | File | File listing sample names | |
| consolnpydir | Directory | Output consolidated NumPy arrays |
Permalink:
https://w3id.org/cwl/view/git/c1ccad9f81cd3fc44a9f6e8d3b27acb154ba03cc/cwl-version/npy/createnpy-wf.cwl
