Workflow: tiling_convert2fastj_gvcf_named.cwl
Fetched 2023-01-12 07:05:58 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Requires:
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| afn | File | ||
| l7g | File | ||
| ref | String | ||
| afnM | File | ||
| aidx | File | ||
| refM | String | ||
| aidxM | File | ||
| pasta | File | ||
| reffa | File | ||
| reffaM | File | ||
| seqidM | String | ||
| tagdir | File | ||
| refstream | File | ||
| bashscript | File | ||
| refdirectory | Directory | ||
| datafilenames | File | ||
| tile_assembly | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step1 |
getdirs_testset.cwl
(ExpressionTool)
|
||
| step2 |
convertgvcf.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out1 | Directory[] | ||
| out2 | 8097abd88bc8ceb2253dee5ea71bbab6[] |
Permalink:
https://w3id.org/cwl/view/git/4765da6828edaa70875c70584673cdaaead72c7b/cwl-version/convert2fastj/gvcf_version/cwl/tiling_convert2fastj_gvcf_named.cwl
