Workflow: Create a tile library (SGLF) for a given set of FastJ files
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
fjt | File | Tool to manipulate FastJ files | |
tagset | File | Compressed tagset in FASTA format | |
datadir | Directory | Directory of FastJ files | |
nchunks | String | Number of chunks to scatter | |
pathmax | String | Last/Maximum path in the tile library | |
pathmin | String | Starting path in the tile library | |
bashscript | File | Master script to create tile library (SGLF) | |
fjcsv2sglf | File | Tool to create tile library |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
step1 |
getpaths_chunk.cwl
(ExpressionTool)
|
||
step2 |
createsglf_chunkv2.cwl
(CommandLineTool)
|
Create SGLF (library) files |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
out1 | 949d06fffd32b91927c2c6f2cd43a771[] | Output tile library |
Permalink:
https://w3id.org/cwl/view/git/2b35e13b565ee799a1c03db3237f459568822f66/cwl-version/tilelib/cwl/tiling_createsglf_chunk-scatter_v2.cwl