Workflow: Create a tile library (SGLF) for a given set of FastJ files
Fetched 2023-01-12 07:23:26 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Requires:
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fjt | File | Tool to manipulate FastJ files | |
| tagset | File | Compressed tagset in FASTA format | |
| datadir | Directory | Directory of FastJ files | |
| nchunks | String | Number of chunks to scatter | |
| pathmax | String | Last/Maximum path in the tile library | |
| pathmin | String | Starting path in the tile library | |
| bashscript | File | Master script to create tile library (SGLF) | |
| fjcsv2sglf | File | Tool to create tile library |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step1 |
getpaths_chunk.cwl
(ExpressionTool)
|
||
| step2 |
createsglf_chunkv2.cwl
(CommandLineTool)
|
Create SGLF (library) files |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| out1 | 949d06fffd32b91927c2c6f2cd43a771[] | Output tile library |
Permalink:
https://w3id.org/cwl/view/git/2b35e13b565ee799a1c03db3237f459568822f66/cwl-version/tilelib/cwl/tiling_createsglf_chunk-scatter_v2.cwl
