Workflow: Create a tile library (SGLF) for a given set of FastJ files

Fetched 2023-01-12 07:23:26 GMT
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Requires:

Inputs

ID Type Title Doc
fjt File Tool to manipulate FastJ files
tagset File Compressed tagset in FASTA format
datadir Directory Directory of FastJ files
nchunks String Number of chunks to scatter
pathmax String Last/Maximum path in the tile library
pathmin String Starting path in the tile library
bashscript File Master script to create tile library (SGLF)
fjcsv2sglf File Tool to create tile library

Steps

ID Runs Label Doc
step1
getpaths_chunk.cwl (ExpressionTool)
step2
createsglf_chunkv2.cwl (CommandLineTool)
Create SGLF (library) files

Outputs

ID Type Label Doc
out1 949d06fffd32b91927c2c6f2cd43a771[] Output tile library
Permalink: https://w3id.org/cwl/view/git/2b35e13b565ee799a1c03db3237f459568822f66/cwl-version/tilelib/cwl/tiling_createsglf_chunk-scatter_v2.cwl