Workflow: lane_map_and_stats.cwl
Fetched 2023-01-04 22:59:22 GMT
Verified with cwltool version 3.1.20221201130942
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| ds_tag | String (Optional) | ||
| lb_tag | String (Optional) | ||
| pl_tag | String (Optional) | ||
| pu_tag | String (Optional) | ||
| raw_reads | File[] | ||
| rg_id_tag | String (Optional) | ||
| map_threads | Integer (Optional) | ||
| sample_name | String | ||
| map_reference | File | ||
| stats_reference | File |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| rna_bas | File | ||
| read_dist | File | ||
| dup_marked_bam | File | ||
| gene_cover_png | File | ||
| transcriptome_bam | File | ||
| dup_marked_bam_dup_met | File | ||
| gene_body_coverage_txt | File | ||
| gene_body_coverage_rscript | File | ||
| gene_body_coverage_updated_rscript | File |
Permalink:
https://w3id.org/cwl/view/git/ee8869f107c2a4fb41144093c8c4e033a53b17d3/cwls/tools/lane_map_and_stats.cwl
