Workflow: exomeseq-gatk4-03-organizedirectories.cwl
Fetched 2023-01-10 20:41:20 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| raw_variants | File[] | ||
| bams_recalibrated | File[] | ||
| fastp_html_reports | File[] | ||
| fastp_json_reports | File[] | ||
| bams_markduplicates | File[] | ||
| metrics_markduplicates | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| org_raw_variants |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_bams_recalibrated |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_fastp_html_reports |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_fastp_json_reports |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_bams_markduplicates |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory | |
| org_metrics_markduplicates |
../utils/files-to-directory.cwl
(ExpressionTool)
|
Moves an array of Files into a named directory |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| raw_variants_dir | Directory | ||
| bams_recalibrated_dir | Directory | ||
| fastp_html_reports_dir | Directory | ||
| fastp_json_reports_dir | Directory | ||
| bams_markduplicates_dir | Directory | ||
| metrics_markduplicates_dir | Directory |
Permalink:
https://w3id.org/cwl/view/git/fd641e00364e257b2119ce5b26aedb01402dfcbe/subworkflows/exomeseq-gatk4-03-organizedirectories.cwl
