Workflow: exomeseq-gatk4-00-prepare-reference-data.cwl
Fetched 2025-03-03 05:24:23 GMT
Verified with cwltool version 3.1.20230201224320
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This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bait_intervals | File[] (Optional) | ||
| reference_genome | File | ||
| target_intervals | File[] (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| make_bait_interval_list |
../tools/picard/picard-BedToIntervalList.cwl
(CommandLineTool)
|
||
| make_target_interval_list |
../tools/picard/picard-BedToIntervalList.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bait_interval_list | File | ||
| target_interval_list | File |
Permalink:
https://w3id.org/cwl/view/git/5438ab97697f9a9b246719302bedc79f305a98f5/subworkflows/exomeseq-gatk4-00-prepare-reference-data.cwl
