CWL Workflow: QIIME2 Step 3

This workflow is Open Source and may be reused according to the terms of: MIT License

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Title	Doc
table	File
rooted_tree	File
sample_metadata	File
output_filename_prefix	String
rarefied_table_filename	String
shannon_vector_filename	String
diversity_sampling_depth	Integer
evenness_vector_filename	String
faith_pd_vector_filename	String
jaccard_emperor_filename	String
bray_curtis_emperor_filename	String
jaccard_pcoa_results_filename	String
observed_otus_vector_filename	String
jaccard_distance_matrix_filename	String
bray_curtis_pcoa_results_filename	String
weighted_unifrac_emperor_filename	String
unweighted_unifrac_metadata_column	String
shannon_group_significance_filename	String
unweighted_unifrac_emperor_filename	String
bray_curtis_distance_matrix_filename	String
evenness_group_significance_filename	String
faith_pd_group_significance_filename	String
weighted_unifrac_pcoa_results_filename	String
unweighted_unifrac_pcoa_results_filename	String
unweighted_unifrac_significance_filename	String
weighted_unifrac_distance_matrix_filename	String
unweighted_unifrac_distance_matrix_filename	String
unweighted_unifrac_body_site_significance_filename	String

ID	Runs	Label	Doc
alpha_beta_diversity	subworkflows/qiime2-paired-alpha-beta-diversity.cwl (Workflow)	qiime2 diversity analyses	Alpha and beta diversity analysis

ID	Type	Label	Doc
rarefied_table	File
shannon_vector	File
evenness_vector	File
faith_pd_vector	File
jaccard_emperor	File
bray_curtis_emperor	File
jaccard_pcoa_results	File
observed_otus_vector	File
jaccard_distance_matrix	File
bray_curtis_pcoa_results	File
weighted_unifrac_emperor	File
unweighted_unifrac_emperor	File
bray_curtis_distance_matrix	File
weighted_unifrac_pcoa_results	File
shannon_group_significance_file	File
unweighted_unifrac_pcoa_results	File
evenness_group_significance_file	File
faith_pd_group_significance_file	File
weighted_unifrac_distance_matrix	File
unweighted_unifrac_distance_matrix	File
unweighted_unifrac_significance_file	File