CWL Workflow: QIIME2 Step 1 paired end sequences

Workflow: QIIME2 Step 1 paired end sequences

Fetched 2023-01-14 02:19:32 GMT

Verified with cwltool version 3.1.20221201130942

QIIME2 Import and Demux Step 1 paired end sequences

This workflow is Open Source and may be reused according to the terms of: MIT License

Note that the tools invoked by the workflow may have separate licenses.

ID	Type	Doc
barcodes	File	barcodes associated with sequences in FASTQ format
sample_metadata	File	Sample metadata in tsv format
forward_sequences	File	paired ended forward sequence reads in FASTQ format
reverse_sequences	File	paired ended reverse sequence reads in FASTQ format
output_filename_prefix	String
demux_sequences_filename	String
metadata_barcodes_column	String	name of the column in sample_metadata that contains barcodes
sequences_artifact_filename	String
demux_visualization_filename	String

ID	Runs	Label	Doc
demux	subworkflows/qiime2-02-demux-emp-paired.cwl (Workflow)	qiime2 demux paired sequences
import_data	subworkflows/qiime2-01-import-data-paired.cwl (Workflow)	qiime2 importing data	Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

ID	Type	Label	Doc
sequences_artifact	File
demux_sequences_artifact	File
demux_visualization_artifact	File