Workflow: fusion_workflow.cwl
Fetched 2023-01-03 20:17:58 GMT
Verified with cwltool version 3.1.20221201130942
Fusion workflow, runs STARFusion and Arriba
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| GTF | File | ||
| CPUS | Integer | ||
| FASTQ1 | File | ||
| FASTQ2 | File | ||
| GENO_FA_GZ | File | ||
| STAR_INDEX | File | ||
| KNOWN_FUSIONS | File | ||
| GENOME_VERSION | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| starfusion |
starfusion.cwl
(CommandLineTool)
|
STAR-fusion workflow by Jacob Pfeil; CWL by Jeltje van Baren |
STAR-Fusion workflow by Jacob Pfeil; CWL by Jeltje van Baren |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| STARFUSIONS | File | ||
| ARRIBAFUSIONS | File |
Permalink:
https://w3id.org/cwl/view/git/a0475b43610078cb2b881908aa9bcbd6beb3f1e9/fusion_workflow.cwl
