Workflow: workflow.cwl
Fetched 2025-10-20 05:28:21 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bgxfile | File [Text data] | Illumina beadchip array file |
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip |
| raw_counts | File [Expression data] | Microarray data |
Illumina beadchip raw gene expression data -GSE77627 |
| clinical_data | File [Text data] | Clinical data |
Clinical phenotype data |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| DEG |
DEG.cwl
(CommandLineTool)
|
||
| wgcna |
wgcna.cwl
(CommandLineTool)
|
||
| ME_network |
ME-network.cwl
(CommandLineTool)
|
||
| module_ora |
module_ora.cwl
(CommandLineTool)
|
||
| gsea_analysis |
gsea_analysis.cwl
(CommandLineTool)
|
||
| pre_processing |
pre-processing.cwl
(CommandLineTool)
|
||
| quality_control |
quality_control.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| net_data_table | File | Network data table |
GSEA network data table |
| gsea_edge_table | File | GSEA edge table |
Edge table for GSEA network result visualisation in Cytoscape |
| gsea_node_table | File | GSEA node table |
Node table for GSEA network result visualisation in Cytoscape |
| add_net_data_table | File | Additional network data table |
GSEA network additional visualisation table |
| module_eigengene_net_edgetable | File | Module eigengene edge data |
Module eigenegene correlation network edge table in Cytoscape |
| module_eigengene_net_nodetable | File | Module eigengene node data |
Module eigenegene correlation network node table in Cytoscape |
Permalink:
https://w3id.org/cwl/view/git/1c71a4e738bb2dfc6552cc284cd023bd9efa51b5/workflow/workflow.cwl
