Workflow: pangenome-generate_spoa.cwl
Fetched 2023-01-11 15:17:48 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqs | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| vizGraph |
tools/odgi/odgi_viz.cwl
(CommandLineTool)
|
odgi viz |
variation graph visualizations |
| buildGraph |
tools/odgi/odgi-build-from-spoa-gfa.cwl
(CommandLineTool)
|
||
| induceGraph |
tools/spoa/spoa.cwl
(CommandLineTool)
|
||
| dedup_and_sort_by_quality_and_len |
tools/sort_fasta_by_quality_and_len/sort_fasta_by_quality_and_len.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| odgiPNG | File | ||
| spoaGFA | File | ||
| odgiGraph | File | ||
| readsMergeDedupSortedByQualAndLen | File |
Permalink:
https://w3id.org/cwl/view/git/dcd78c2e0cd9a421bca19ee7ea29b83a1e26bb27/pangenome-generate_spoa.cwl
