Workflow: Report generation workflow
Fetched 2023-01-11 21:05:16 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU Affero General Public License v3.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| gvcf | File | ||
| headhtml | File | ||
| tailhtml | File | ||
| clinvarvcf | File | ||
| reportfunc | File | ||
| samplename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| annotate |
annotate-vcf.cwl
(CommandLineTool)
|
Annotating and Filtering VCF | |
| gvcf-to-vcf |
gvcf-to-vcf.cwl
(CommandLineTool)
|
Converts gvcf to vcf | |
| generate-report |
generate-report.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| report | File |
Permalink:
https://w3id.org/cwl/view/git/ef89d0aabd706c59168537f69742e570373fdd84/WGS-processing/cwl/helper/report-wf.cwl
