CWL Workflow: workflow_i2g.cwl

This workflow is Open Source and may be reused according to the terms of: Apache License 2.0

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Title	Doc
mode	String
xmax	Integer (Optional)
xmin	Integer (Optional)
ymax	Integer (Optional)
ymin	Integer (Optional)
zmax	Integer (Optional)
zmin	Integer (Optional)
width	Integer (Optional)
height	Integer (Optional)
padding	Integer (Optional)
exp_name	String
coll_name	String
coord_name	String
resolution	Integer (Optional)
train_file	File (Optional)
host_bossdb	String
neuron_mode	String
token_bossdb	String (Optional)
agg_threshold	String
dtype_name_in	String
itype_name_in	String
neuron_output	String
synapse_output	String
membrane_output	String
in_chan_name_raw	String
assoc_output_name	String
seeds_cc_threshold	String
pull_output_name_raw	String
assoc_output_name_noneu	String

ID	Runs	Label	Doc
assoc	../../saber/i2g/seg_syn_association/assoc_local.cwl (CommandLineTool)
boss_pull_raw	../../saber/boss_access/boss_pull_nos3.cwl (CommandLineTool)
synapse_detection	../../saber/i2g/detection/synapse_detection_gpu.cwl (CommandLineTool)
membrane_detection	../../saber/i2g/detection/membrane_detection_gpu.cwl (CommandLineTool)
neuron_segmentation	../../saber/i2g/neuron_segmentation/neuron_segmentation.cwl (CommandLineTool)

ID	Type	Label	Doc
assoc_output	File
pull_output_raw	File
synapse_detection	File
assoc_output_noneu	File
membrane_detection	File
neuron_segmentation	File