Workflow: HS Metrics workflow

Fetched 2024-07-18 20:50:52 GMT
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Workflow as SVG
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  • Default Values
  • Nested Workflows
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  • Inputs/Outputs

Inputs

ID Type Title Doc
bam File
reference File
summary_intervals https://w3id.org/cwl/view/git/bfcb5ffbea3d00a38cc03595d41e53ea976d599d/definitions/types/labelled_file.yml#labelled_file[]
per_base_intervals https://w3id.org/cwl/view/git/bfcb5ffbea3d00a38cc03595d41e53ea976d599d/definitions/types/labelled_file.yml#labelled_file[]
minimum_base_quality Integer (Optional)
per_target_intervals https://w3id.org/cwl/view/git/bfcb5ffbea3d00a38cc03595d41e53ea976d599d/definitions/types/labelled_file.yml#labelled_file[]
minimum_mapping_quality Integer (Optional)

Steps

ID Runs Label Doc
collect_summary_hs_metrics
../tools/collect_hs_metrics.cwl (CommandLineTool)
collect HS metrics
collect_per_base_hs_metrics
../tools/collect_hs_metrics.cwl (CommandLineTool)
collect HS metrics
collect_per_target_hs_metrics
../tools/collect_hs_metrics.cwl (CommandLineTool)
collect HS metrics

Outputs

ID Type Label Doc
summary_hs_metrics File[]
per_base_hs_metrics File[]
per_target_hs_metrics File[]
per_base_coverage_metrics File[]
per_target_coverage_metrics File[]
Permalink: https://w3id.org/cwl/view/git/bfcb5ffbea3d00a38cc03595d41e53ea976d599d/definitions/subworkflows/hs_metrics.cwl