Workflow: waltz-workflow.cwl

Fetched 2024-07-19 10:54:45 GMT
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Workflow as SVG
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  • Inputs/Outputs

Inputs

ID Type Title Doc
bed_file File
gene_list File
input_bam File
run_tools https://w3id.org/cwl/view/git/3441040dfaecba58150c13a95a6a93657b00778a/resources/schemas/collapsing_tools.yaml#run_tools
waltz__params https://w3id.org/cwl/view/git/3441040dfaecba58150c13a95a6a93657b00778a/resources/schemas/params/waltz.yaml#waltz__params
reference_fasta String
reference_fasta_fai String

Steps

ID Runs Label Doc
count_reads
../../cwl_tools/waltz/CountReads.cwl (CommandLineTool)

None

pileup_metrics
../../cwl_tools/waltz/PileupMetrics.cwl (CommandLineTool)
grouped_waltz_files
../../cwl_tools/expression_tools/group_waltz_files.cwl (ExpressionTool)

Outputs

ID Type Label Doc
pileup File
waltz_output_files File[]
Permalink: https://w3id.org/cwl/view/git/3441040dfaecba58150c13a95a6a93657b00778a/workflows/waltz/waltz-workflow.cwl