Workflow: limit_detection.cwl
Fetched 2023-01-11 21:54:07 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fqSeqs | https://w3id.org/cwl/view/git/d0be8f7f06973766c74497f05be7f0150b680610/limit_detection/readPair.yml#FilePair[] | ||
| out_fn | String | ||
| exec_path | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| mlst |
mlst.cwl
(CommandLineTool)
|
||
| subsample |
seqtk_sample_PE.cwl
(Workflow)
|
||
| spades-fast |
spades-fast.cwl
(CommandLineTool)
|
||
| unpack_output |
limit_detection.cwl#unpack_output/bf280b5e-94c0-4911-8d62-d5ce4aed58b8
(ExpressionTool)
|
||
| rename_contigs |
limit_detection.cwl#rename_contigs/ab5c4b68-bd1d-4563-87ff-6cec08fb822f
(CommandLineTool)
|
||
| collect_mlst_res |
limit_detection.cwl#collect_mlst_res/1194af64-477c-4836-817f-1d02351b0205
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| mlst_collection | File |
Permalink:
https://w3id.org/cwl/view/git/d0be8f7f06973766c74497f05be7f0150b680610/limit_detection/limit_detection.cwl
