Workflow: SARS_psm_workflow.cwl
Fetched 2023-01-09 12:54:28 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bait | String | ||
| fasta | File | ||
| mztab | File | ||
| psm_R | File | ||
| idxml_output | String | ||
| mztab_output | String | ||
| IL_equivalent | Boolean | ||
| allow_unmatched | Boolean | ||
| mztab_to_csv_py | File | ||
| mztab_to_idxml_py | File | ||
| enzyme_specificity | String | ||
| missing_decoy_action | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| psm |
Tools/psm.cwl
(CommandLineTool)
|
||
| mztab_to_csv |
Tools/mztab_to_csv.cwl
(CommandLineTool)
|
||
| mztab_exporter |
Tools/mztab_exporter.cwl
(CommandLineTool)
|
||
| mztab_to_idxml |
Tools/mztab_to_idxml.cwl
(CommandLineTool)
|
||
| peptide_indexer |
Tools/peptide_indexer.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| psm | File |
Permalink:
https://w3id.org/cwl/view/git/f165c14d6d2e20a5133fc42251ae565fcbe520f6/SARS_psm_workflow.cwl
