Workflow: Spectral_counting_workflow.cwl
Fetched 2023-01-14 04:30:22 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bait | String | ||
| fasta | File | ||
| mztab | File | ||
| idxml_output | String | ||
| IL_equivalent | Boolean | ||
| pepxml_output | String | ||
| allow_unmatched | Boolean | ||
| mztab_to_idxml_py | File | ||
| enzyme_specificity | String | ||
| unique_per_protein | Boolean | ||
| missing_decoy_action | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| ID_filter |
Tools/ID_filter.cwl
(CommandLineTool)
|
||
| mztab_to_idxml |
Tools/mztab_to_idxml.cwl
(CommandLineTool)
|
||
| peptide_indexer |
Tools/peptide_indexer.cwl
(CommandLineTool)
|
||
| ID_file_converter |
Tools/ID_file_converter.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| pepxml | File |
Permalink:
https://w3id.org/cwl/view/git/bd5283d22ec9f49770ab11ce8881c13db120157b/Spectral_counting_workflow.cwl
