Workflow: Protein_Inference_workflow.cwl
Fetched 2025-01-27 14:57:44 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| cp | File | ||
| jar | File | ||
| bait | String | ||
| name | String | ||
| fasta | File | ||
| mztab | File | ||
| compiler | String | ||
| fileType | String | ||
| paramFile | File | ||
| xml_output | String | ||
| idxml_output | String | ||
| IL_equivalent | Boolean | ||
| proteinExport | String | ||
| pia_proteins_R | File | ||
| allow_unmatched | Boolean | ||
| mztab_to_csv_py | File | ||
| mztab_to_idxml_py | File | ||
| enzyme_specificity | String | ||
| missing_decoy_action | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| pia_run |
Tools/pia_run.cwl
(CommandLineTool)
|
||
| pia_xml |
Tools/pia_xml.cwl
(CommandLineTool)
|
||
| mztab_to_csv |
Tools/mztab_to_csv.cwl
(CommandLineTool)
|
||
| pia_proteins |
Tools/pia_proteins.cwl
(CommandLineTool)
|
||
| mztab_to_idxml |
Tools/mztab_to_idxml.cwl
(CommandLineTool)
|
||
| peptide_indexer |
Tools/peptide_indexer.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| pia_proteins | File |
Permalink:
https://w3id.org/cwl/view/git/90e89d0feac36a1cadbac0625a32ff6b1ee715fb/Protein_Inference_workflow.cwl
