Workflow: wf_bam_to_bigwig.cwl
Fetched 2023-01-11 17:47:34 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 3-clause "New" or "Revised" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| split | Boolean | ||
| strand | String | ||
| bedgraph | Boolean | ||
| input_bam | File | ||
| chrom_sizes | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_rename |
rename.cwl
(CommandLineTool)
|
||
| step_sort_bedgraph |
sort_bedgraph.cwl
(CommandLineTool)
|
||
| step_bam_to_bedgraph |
bam_to_bedgraph.cwl
(CommandLineTool)
|
||
| step_bedgraphtobigwig |
bedgraphtobigwig.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_bigwig | File | ||
| output_bedgraph | File | ||
| output_sorted_bedgraph | File |
Permalink:
https://w3id.org/cwl/view/git/8dd7b83d5252a7e9b40307a8da5e55e4bbf1f7a1/cwl/wf_bam_to_bigwig.cwl
