Workflow: wf_fastqc.cwl
Fetched 2023-01-04 22:28:29 GMT
Verified with cwltool version 3.1.20221201130942
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 3-clause "New" or "Revised" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reads | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_fastqc |
fastqc.cwl
(CommandLineTool)
|
||
| step_rename_stats |
rename.cwl
(CommandLineTool)
|
||
| step_rename_report |
rename.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output_qc_stats | File | ||
| output_qc_report | File |
Permalink:
https://w3id.org/cwl/view/git/b4be31e4b809716f65354c0a3d0eff49949eabff/cwl/wf_fastqc.cwl
