Workflow: wf_fastqc.cwl

Fetched 2023-01-04 10:41:45 GMT

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

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Inputs

ID Type Title Doc
reads File

Steps

ID Runs Label Doc
step_fastqc
fastqc.cwl (CommandLineTool)
step_rename_stats
rename.cwl (CommandLineTool)
step_rename_report
rename.cwl (CommandLineTool)

Outputs

ID Type Label Doc
output_qc_stats File
output_qc_report File
Permalink: https://w3id.org/cwl/view/git/6b533898c395e9e5b9d0acc1587d0c68bc56abe0/cwl/wf_fastqc.cwl