Workflow: rMATS_bam_packed.cwl
Fetched 2026-08-08 02:05:11 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/Xinglab/rmats-turbo/d8a684fb748ea38385bfdd552822fd7f563fd642/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| wf_gtf | File | ||
| wf_mel | Integer (Optional) | ||
| wf_mil | Integer (Optional) | ||
| wf_cstat | String (Optional) | ||
| wf_tstat | Integer (Optional) | ||
| wf_bam_g1 | File[] | ||
| wf_bam_g2 | File[] (Optional) | ||
| wf_novelSS | Boolean (Optional) | ||
| wf_nthread | Integer (Optional) | ||
| wf_out_dir | String | ||
| wf_statoff | Boolean (Optional) | ||
| wf_lib_type | String (Optional) | ||
| wf_readLength | Integer | ||
| wf_darts_model | Boolean (Optional) | ||
| wf_anchorLength | Integer (Optional) | ||
| wf_darts_cutoff | String (Optional) | ||
| wf_paired_stats | Boolean (Optional) | ||
| wf_disk_space_gb | Integer (Optional) | ||
| wf_is_single_end | Boolean (Optional) | ||
| wf_allow_clipping | Boolean (Optional) | ||
| wf_machine_mem_gb | Integer (Optional) | ||
| wf_individual_counts | Boolean (Optional) | ||
| wf_variable_read_length | Boolean (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_post |
d8ef69660de781e0e571473c66a3f501
(CommandLineTool)
|
||
| step_prep_g1 |
7c6a54df252e6c213bb5d1b70369923a
(CommandLineTool)
|
||
| step_prep_g2 |
6b8662e6be5b2dc615deadd3d7ef28a0
(CommandLineTool)
|
||
| step_exp_prep_g1 |
f025bbc5298a8698ebdb327175b2a5f6
(ExpressionTool)
|
||
| step_exp_prep_g2 |
eb8c27a92659a7155c0de072059c21b4
(ExpressionTool)
|
||
| step_exp_read_outcome |
383e74a9afe615b9664e77343d9a91e1
(ExpressionTool)
|
||
| step_exp_file_to_loc_g1 |
5d7d4cbb1afb5580e39564295a2f1586
(ExpressionTool)
|
||
| step_exp_file_to_loc_g2 |
a1db8a0998212f838b7d5e43fdc1fc63
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| wf_out_tar | File | ||
| wf_read_outcomes | File[] |
Permalink:
https://w3id.org/cwl/view/git/d8a684fb748ea38385bfdd552822fd7f563fd642/cwl/rMATS_bam_packed.cwl
