Workflow: rMATS_bam_packed.cwl
Fetched 2026-05-20 20:41:33 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/Xinglab/rmats-turbo/07feebca2346fe696d563fc0de1f1adae1bff316/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| wf_gtf | File | ||
| wf_mel | Integer (Optional) | ||
| wf_mil | Integer (Optional) | ||
| wf_cstat | String (Optional) | ||
| wf_tstat | Integer (Optional) | ||
| wf_bam_g1 | File[] | ||
| wf_bam_g2 | File[] (Optional) | ||
| wf_novelSS | Boolean (Optional) | ||
| wf_nthread | Integer (Optional) | ||
| wf_out_dir | String | ||
| wf_statoff | Boolean (Optional) | ||
| wf_lib_type | String (Optional) | ||
| wf_readLength | Integer | ||
| wf_darts_model | Boolean (Optional) | ||
| wf_anchorLength | Integer (Optional) | ||
| wf_darts_cutoff | String (Optional) | ||
| wf_paired_stats | Boolean (Optional) | ||
| wf_disk_space_gb | Integer (Optional) | ||
| wf_is_single_end | Boolean (Optional) | ||
| wf_allow_clipping | Boolean (Optional) | ||
| wf_machine_mem_gb | Integer (Optional) | ||
| wf_individual_counts | Boolean (Optional) | ||
| wf_variable_read_length | Boolean (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_post |
44a441b894f3c793f4c4eddcf2f1777a
(CommandLineTool)
|
||
| step_prep_g1 |
61082615a7e1e6c7b47e0403c9d09813
(CommandLineTool)
|
||
| step_prep_g2 |
027ab1fdda8f682215d1acbada066c72
(CommandLineTool)
|
||
| step_exp_prep_g1 |
239f16dcfaa417a12b40ae7dcdb774cf
(ExpressionTool)
|
||
| step_exp_prep_g2 |
a168e7525dbfaca6eec4da74840b7a70
(ExpressionTool)
|
||
| step_exp_read_outcome |
eb00c78d40432018e3a3a9b866ffc2ad
(ExpressionTool)
|
||
| step_exp_file_to_loc_g1 |
d2e943334e3cbcf79fcefb7a1f29dca4
(ExpressionTool)
|
||
| step_exp_file_to_loc_g2 |
d309509bb663bc2728f72539f217a8a1
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| wf_out_tar | File | ||
| wf_read_outcomes | File[] |
Permalink:
https://w3id.org/cwl/view/git/07feebca2346fe696d563fc0de1f1adae1bff316/cwl/rMATS_bam_packed.cwl
