Workflow: rMATS_bam_packed.cwl
Fetched 2026-09-01 13:36:15 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/Xinglab/rmats-turbo/015c0305f87cdeec0edd56a99d5ab1689832fa40/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| wf_gtf | File | ||
| wf_mel | Integer (Optional) | ||
| wf_mil | Integer (Optional) | ||
| wf_cstat | String (Optional) | ||
| wf_tstat | Integer (Optional) | ||
| wf_bam_g1 | File[] | ||
| wf_bam_g2 | File[] (Optional) | ||
| wf_novelSS | Boolean (Optional) | ||
| wf_nthread | Integer (Optional) | ||
| wf_out_dir | String | ||
| wf_statoff | Boolean (Optional) | ||
| wf_lib_type | String (Optional) | ||
| wf_readLength | Integer | ||
| wf_darts_model | Boolean (Optional) | ||
| wf_anchorLength | Integer (Optional) | ||
| wf_darts_cutoff | String (Optional) | ||
| wf_paired_stats | Boolean (Optional) | ||
| wf_disk_space_gb | Integer (Optional) | ||
| wf_is_single_end | Boolean (Optional) | ||
| wf_allow_clipping | Boolean (Optional) | ||
| wf_machine_mem_gb | Integer (Optional) | ||
| wf_individual_counts | Boolean (Optional) | ||
| wf_variable_read_length | Boolean (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_post |
28cf059daa5e9059f7330f0388be896a
(CommandLineTool)
|
||
| step_prep_g1 |
c8c96adbae2d5ba0a74a2607c213a85f
(CommandLineTool)
|
||
| step_prep_g2 |
2886077fef2b0bdf9052b9a1006facfc
(CommandLineTool)
|
||
| step_exp_prep_g1 |
9755ebb32b2a513de1c9b2f9e17b55c9
(ExpressionTool)
|
||
| step_exp_prep_g2 |
f255ccac7ae53bb4189ac1e1df8c5083
(ExpressionTool)
|
||
| step_exp_read_outcome |
4792b7832eabed36c3e590ed59c6c13a
(ExpressionTool)
|
||
| step_exp_file_to_loc_g1 |
20622b5b13fe24d9baa080a55cc49b2a
(ExpressionTool)
|
||
| step_exp_file_to_loc_g2 |
60b86ee4f34136c9b00c2e82e363dc61
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| wf_out_tar | File | ||
| wf_read_outcomes | File[] |
Permalink:
https://w3id.org/cwl/view/git/015c0305f87cdeec0edd56a99d5ab1689832fa40/cwl/rMATS_bam_packed.cwl
