Workflow: WorkflowNo_22
Fetched 2023-10-20 13:54:27 GMT
Verified with cwltool version 3.1.20230201224320
A workflow including the tool(s) Comet, idconvert, mzRecal, Comet, PeptideProphet, ProteinProphet.
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input1 | File [mzML] | ||
| input2 | File [FASTA] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Comet1 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/Comet/Comet.cwl
(CommandLineTool)
|
comet-ms | |
| Comet4 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/Comet/Comet.cwl
(CommandLineTool)
|
comet-ms | |
| mzRecal3 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/mzRecal/mzRecal.cwl
(CommandLineTool)
|
mzRecal.cwl | |
| idconvert2 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/idconvert/idconvert.cwl
(CommandLineTool)
|
idconvert.cwl | |
| PeptideProphet5 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/PeptideProphet/PeptideProphet.cwl
(CommandLineTool)
|
PeptideProphet.cwl | |
| ProteinProphet6 |
https://raw.githubusercontent.com/Workflomics/containers/docker/cwl/tools/ProteinProphet/ProteinProphet.cwl
(CommandLineTool)
|
ProteinProphet.cwl |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output1 | File [protXML] |
Permalink:
https://w3id.org/cwl/view/git/00693ced2df1e35a0aba01995bb24538613de9b5/WombatP_tools/workflow_example_prot.cwl
