Workflow: pdx-scatter.cwl
Fetched 2023-01-12 14:49:37 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reads1 | File[] | ||
| reads2 | File[] | ||
| adapters | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| all |
pdx-pl.cwl
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| trim-logs | File[] | ||
| unassigned | File[] (Optional) | ||
| unresolved | File[] (Optional) | ||
| human-index | File[] | ||
| human-sorted | File[] | ||
| human-aligned | File[] | ||
| mouse-aligned | File[] | ||
| primary_multi | File[] (Optional) | ||
| human-compress | File[] | ||
| secondary_multi | File[] (Optional) | ||
| primary_specific | File[] (Optional) | ||
| secondary_specific | File[] (Optional) | ||
| gridss-bam-work-dir | Directory[] | ||
| gridss-tabix-output | File[] | ||
| gridss-vcf-work-dir | Directory[] | ||
| platypus-tabix-output | File[] | ||
| rename_reads1_trimmed_file | File[] | ||
| reads1_trimmed_unpaired_file | File[] (Optional) | ||
| reads2_trimmed_unpaired_file | File[] (Optional) | ||
| rename_reads2_trimmed_paired_file | File[] (Optional) |
Permalink:
https://w3id.org/cwl/view/git/4bf9858ea46ed81165357e1b15575c581cb5c181/src/pdx-scatter.cwl
