Workflow: rw-distr.cwl
Fetched 2023-01-04 21:34:11 GMT
Verified with cwltool version 3.1.20221201130942
run scatter-gather for rw stage
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 2-clause "Simplified" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| qcal | File[] (Optional) | ||
| shard | String[] | ||
| threads | Integer (Optional) | ||
| input_bam | File[] | ||
| reference | File (Optional) | ||
| output_file | String | ||
| advanced_options | String[] (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| rw |
../algo/rw.cwl
(CommandLineTool)
|
||
| merge |
../algo/bam-merge.cwl
(CommandLineTool)
|
merge sorted bam files. If input bam files are in the order of coordinate, and no overlap, mergemode 10 can be used |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/845f4699c5fce96a4c708a553b3701c9cf296653/stage/rw-distr.cwl
