Workflow: workflow.cwl
Fetched 2023-01-03 21:24:40 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| submissionId | Integer | ||
| synapseConfig | File | ||
| adminUploadSynId | String | ||
| workflowSynapseId | String | ||
| submitterUploadSynId | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| scoring |
score.cwl
(CommandLineTool)
|
||
| run_docker |
run_docker.cwl
(CommandLineTool)
|
||
| validation |
validate.cwl
(CommandLineTool)
|
||
| score_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/score_email.cwl
(CommandLineTool)
|
||
| check_status |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
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| upload_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/upload_to_synapse.cwl
(CommandLineTool)
|
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| run_docker_real |
run_docker.cwl
(CommandLineTool)
|
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| validate_docker |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_docker.cwl
(CommandLineTool)
|
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| validation_real |
validate.cwl
(CommandLineTool)
|
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| get_goldstandard |
get_goldstandard.cwl
(CommandLineTool)
|
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| validation_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
|
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| check_status_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
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| get_docker_config |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/get_docker_config.cwl
(CommandLineTool)
|
||
| determine_question |
determine_question.cwl
(ExpressionTool)
|
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| check_docker_status |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
||
| upload_results_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/upload_to_synapse.cwl
(CommandLineTool)
|
||
| get_docker_submission |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/get_submission.cwl
(CommandLineTool)
|
||
| validation_email_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
|
||
| docker_validation_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
|
||
| determine_submission_number |
determine_submission_number.cwl
(CommandLineTool)
|
||
| set_admin_folder_permissions |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/set_permissions.cwl
(CommandLineTool)
|
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| annotate_docker_upload_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
||
| annotate_submission_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| annotate_validation_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| set_submitter_folder_permissions |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/set_permissions.cwl
(CommandLineTool)
|
||
| annotate_docker_upload_results_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| annotate_validation_with_output_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
||
| annotate_docker_validation_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
Outputs
There are no outputs in this workflow
Permalink:
https://w3id.org/cwl/view/git/2b25165f296b680194603676054eabd1d6df304c/workflow.cwl
