Workflow: bird_workflow.cwl
Fetched 2023-04-16 11:49:10 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| locations | File | ||
| bird_range | String | ||
| min_effect | Float | ||
| genome_file | File | ||
| mpileup_depth | Integer | ||
| alignment_sets | File[] | ||
| replicate_names | String[] | ||
| bird_output_file | String | ||
| mcmc_sample_count | Integer | ||
| bird_output_prefix | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bird |
04_bird/bird.cwl
(CommandLineTool)
|
Run BIRD on data |
|
| mpileups |
01_mpileups/pileups_workflow.cwl
(Workflow)
|
||
| combineCounts |
02_combine_counts/combine_counts.cwl
(Workflow)
|
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
|
| birdScatterValues |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bird_output | File[] | ||
| logged_output | File[] |
Permalink:
https://w3id.org/cwl/view/git/5e08b9b8a0323a1f4740a65bdb356e9b75074093/bird_workflow.cwl
