Workflow: functional analysis prediction with InterProScan
Fetched 2023-01-11 22:35:16 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
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- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| predicted_CDS | File | ||
| go_summary_config | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| summarize_with_GO |
../tools/go_summary.cwl
(CommandLineTool)
|
||
| functional_analysis |
../tools/InterProScan5.21-60.cwl
(CommandLineTool)
|
InterProScan: protein sequence classifier |
Version 5.21-60 can be downloaded here:
https://github.com/ebi-pf-team/interproscan/wiki/HowToDownload |
| remove_asterisks_and_reformat |
../tools/esl-reformat.cwl
(CommandLineTool)
|
normalize to fasta |
normalizes input sequeces to FASTA with fixed number of sequence characters per line using esl-reformat from https://github.com/EddyRivasLab/easel |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| go_summary | File | ||
| functional_annotations | File |
Permalink:
https://w3id.org/cwl/view/git/85155424fa5654526517369be2fa479a7d4d90de/workflows/functional_analysis.cwl
