Workflow: functional analysis prediction with InterProScan

Fetched 2023-01-11 22:35:16 GMT
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Workflow as SVG
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Inputs

ID Type Title Doc
predicted_CDS File
go_summary_config File

Steps

ID Runs Label Doc
summarize_with_GO
../tools/go_summary.cwl (CommandLineTool)
functional_analysis
../tools/InterProScan5.21-60.cwl (CommandLineTool)
InterProScan: protein sequence classifier

Version 5.21-60 can be downloaded here: https://github.com/ebi-pf-team/interproscan/wiki/HowToDownload

Documentation on how to run InterProScan 5 can be found here: https://github.com/ebi-pf-team/interproscan/wiki/HowToRun

remove_asterisks_and_reformat
../tools/esl-reformat.cwl (CommandLineTool)
normalize to fasta

normalizes input sequeces to FASTA with fixed number of sequence characters per line using esl-reformat from https://github.com/EddyRivasLab/easel

Outputs

ID Type Label Doc
go_summary File
functional_annotations File
Permalink: https://w3id.org/cwl/view/git/85155424fa5654526517369be2fa479a7d4d90de/workflows/functional_analysis.cwl