Workflow: cmsearch-multimodel.cwl

Fetched 2024-04-23 04:19:29 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
clan_info File
query_sequences File
covariance_models File[]

Steps

ID Runs Label Doc
cmsearch
../tools/infernal-cmsearch.cwl (CommandLineTool)
search sequence(s) against a covariance model database

http://eddylab.org/infernal/Userguide.pdf

remove_overlaps
../tools/cmsearch-deoverlap.cwl (CommandLineTool)
remove lower scoring overlaps from cmsearch --tblout files.

https://github.com/nawrockie/cmsearch_tblout_deoverlap/blob/master/00README.txt

concatenate_matches
../tools/concatenate.cwl (CommandLineTool)

Outputs

ID Type Label Doc
matches File
Permalink: https://w3id.org/cwl/view/git/5e8217435bcdd597b2ad236f3e847d13d4c21824/workflows/cmsearch-multimodel.cwl