- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
5S_model | File [HMMER format] | ||
16S_model | File [HMMER format] | ||
23S_model | File [HMMER format] | ||
tRNA_model | File [HMMER format] | ||
forward_reads | File [FASTQ] | ||
reverse_reads | File [FASTQ] | ||
go_summary_config | File | ||
fraggenescan_model | https://w3id.org/cwl/view/git/583307878ab83c5845c897f03db920ae8e1929e2/tools/FragGeneScan-model.yaml#model |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
overlap_reads |
../tools/seqprep.cwl
(CommandLineTool)
|
||
unified_processing |
emg-pipeline-v3.cwl
(Workflow)
|
EMG pipeline v3.0 (single end version) | |
combine_overlaped_and_unmerged_reads |
../tools/seqprep-merge.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
tree | File | ||
biom_json | File | ||
predicted_CDS | File | ||
otu_table_summary | File | ||
processed_sequences | File | ||
functional_annotations | File |
Permalink:
https://w3id.org/cwl/view/git/583307878ab83c5845c897f03db920ae8e1929e2/workflows/emg-pipeline-v3-paired.cwl