- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
16S_matches | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
prune_tree |
../tools/qiime-filter_tree.cwl
(CommandLineTool)
|
||
extract_observations |
../tools/extract_observations.cwl
(CommandLineTool)
|
||
modify_taxonomy_table |
../tools/modify_taxonomy_table.cwl
(CommandLineTool)
|
generate a modified tsv taxonomy file that works with the current web app | |
create_otu_text_summary |
../tools/biom-summarize_table.cwl
(CommandLineTool)
|
||
convert_otu_counts_to_hdf5 |
../tools/biom-convert.cwl
(CommandLineTool)
|
||
pick_closed_reference_otus |
../tools/qiime-pick_closed_reference_otus.cwl
(CommandLineTool)
|
||
convert_new_biom_to_classic |
../tools/biom-convert.cwl
(CommandLineTool)
|
||
convert_new_biom_to_old_biom |
../tools/biom-convert.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
tree | File | ||
biom_tsv | File | ||
biom_hdf5 | File | ||
biom_json | File | ||
otu_table_summary | File | ||
qiime_assigned_taxonomy | File | ||
qiime_sequences-filtered_otus | File | ||
qiime_sequences-filtered_clusters | File |
Permalink:
https://w3id.org/cwl/view/git/47d6375df6c6e4486e03d964b3abf1d71943e609/workflows/16S_taxonomic_analysis.cwl