Workflow: tRNA_selection.cwl

Fetched 2020-04-08 11:37:23 GMT
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Inputs

ID Type Title Doc
indexed_sequences File [FASTA]
model File [HMMER format] tRNA model to search with

Steps

ID Runs Label Doc
extract_coord_lines
extract_coord_lines.cwl (CommandLineTool)
extract_coordinates
tRNA_selection.cwl#extract_coordinates/extract_coordinates (CommandLineTool)
nhmmer
nhmmer.cwl (CommandLineTool)
search profile(s) against a sequence database
fetch_aligned_sequences
esl-sfetch-manyseqs.cwl (CommandLineTool)
extract by names from an indexed sequence file

https://github.com/EddyRivasLab/easel

Outputs

ID Type Label Doc
matching_sequences File [FASTA]
hmmer_search_results File
Permalink: https://w3id.org/cwl/view/git/0cd2d70d63a8ceb2de28f0faac19c919a7bd35ff/tools/tRNA_selection.cwl