Workflow: htseq_workflow.cwl
Fetched 2023-01-09 22:36:47 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam_file | File[] | ||
| gtf_file | File | ||
| job_uuid | String | ||
| gene_lengths | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| run_fpkm |
../../tools/calculate_fpkm.cwl
(CommandLineTool)
|
||
| run_htseq_counts |
../../tools/htseq_count.cwl
(CommandLineTool)
|
||
| run_merge_counts |
../../tools/merge_htseq.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| htseq_fpkm | File | ||
| htseq_counts | File | ||
| htseq_fpkm_uq | File |
Permalink:
https://w3id.org/cwl/view/git/1ba6b619154cf892c45dec3977fbd25153bcebab/workflows/subworkflows/htseq_workflow.cwl
